Index

A

apply_along_da_axis() (in module movement.utils.broadcasting)

as_kwargs() (movement.napari.layer_styles.LayerStyle method) (movement.napari.layer_styles.PointsStyle method)

B

BaseRegionOfInterest (class in movement.roi.base)

broadcastable_method() (in module movement.utils.broadcasting)

C

calculate_nan_stats() (in module movement.utils.reports) cart2pol() (in module movement.utils.vector) compute_acceleration() (in module movement.kinematics) compute_allocentric_angle_to_nearest_point() (movement.roi.base.BaseRegionOfInterest method) (movement.roi.line.LineOfInterest method) (movement.roi.polygon.PolygonOfInterest method) compute_angle_to_normal() (movement.roi.line.LineOfInterest method) compute_approach_vector() (movement.roi.base.BaseRegionOfInterest method) (movement.roi.line.LineOfInterest method) (movement.roi.polygon.PolygonOfInterest method) compute_displacement() (in module movement.kinematics) compute_distance_to() (movement.roi.base.BaseRegionOfInterest method) (movement.roi.line.LineOfInterest method) (movement.roi.polygon.PolygonOfInterest method) compute_egocentric_angle_to_nearest_point() (movement.roi.base.BaseRegionOfInterest method) (movement.roi.line.LineOfInterest method) (movement.roi.polygon.PolygonOfInterest method) compute_forward_vector() (in module movement.kinematics) compute_forward_vector_angle() (in module movement.kinematics) compute_head_direction_vector() (in module movement.kinematics)

compute_nearest_point_to() (movement.roi.base.BaseRegionOfInterest method) (movement.roi.line.LineOfInterest method) (movement.roi.polygon.PolygonOfInterest method) compute_norm() (in module movement.utils.vector) compute_pairwise_distances() (in module movement.kinematics) compute_path_length() (in module movement.kinematics) compute_region_occupancy() (in module movement.roi.conditions) compute_signed_angle_2d() (in module movement.utils.vector) compute_speed() (in module movement.kinematics) compute_time_derivative() (in module movement.kinematics) compute_velocity() (in module movement.kinematics) confidence_array (movement.validators.datasets.ValidBboxesDataset attribute) (movement.validators.datasets.ValidPosesDataset attribute) configure() (movement.utils.logging.MovementLogger method) contains_point() (movement.roi.base.BaseRegionOfInterest method) (movement.roi.line.LineOfInterest method) (movement.roi.polygon.PolygonOfInterest method) convert_to_unit() (in module movement.utils.vector) coords (movement.roi.base.BaseRegionOfInterest property) (movement.roi.line.LineOfInterest property) (movement.roi.polygon.PolygonOfInterest property)

D

dimensions (movement.roi.base.BaseRegionOfInterest property) (movement.roi.line.LineOfInterest property) (movement.roi.polygon.PolygonOfInterest property)

ds_to_napari_tracks() (in module movement.napari.convert)

E

error() (movement.utils.logging.MovementLogger method) exception() (movement.utils.logging.MovementLogger method) expected_datasets (movement.validators.files.ValidHDF5 attribute)

expected_permission (movement.validators.files.ValidFile attribute) expected_suffix (movement.validators.files.ValidFile attribute) exterior_boundary (movement.roi.polygon.PolygonOfInterest property)

F

fetch_dataset() (in module movement.sample_data) fetch_dataset_paths() (in module movement.sample_data) filter_by_confidence() (in module movement.filtering) fps (movement.validators.datasets.ValidBboxesDataset attribute) (movement.validators.datasets.ValidPosesDataset attribute) frame_array (movement.validators.datasets.ValidBboxesDataset attribute) frame_regexp (movement.validators.files.ValidVIATracksCSV attribute) from_anipose_file() (in module movement.io.load_poses) from_anipose_style_df() (in module movement.io.load_poses)

from_dlc_file() (in module movement.io.load_poses) from_dlc_style_df() (in module movement.io.load_poses) from_file() (in module movement.io.load_bboxes) (in module movement.io.load_poses) from_lp_file() (in module movement.io.load_poses) from_multiview_files() (in module movement.io.load_poses) from_numpy() (in module movement.io.load_bboxes) (in module movement.io.load_poses) from_sleap_file() (in module movement.io.load_poses) from_via_tracks_file() (in module movement.io.load_bboxes)

H

holes (movement.roi.polygon.PolygonOfInterest property)

I

individual_names (movement.validators.datasets.ValidBboxesDataset attribute) (movement.validators.datasets.ValidPosesDataset attribute) interior_boundaries (movement.roi.polygon.PolygonOfInterest property)

interpolate_over_time() (in module movement.filtering) is_closed (movement.roi.base.BaseRegionOfInterest property) (movement.roi.line.LineOfInterest property) (movement.roi.polygon.PolygonOfInterest property)

K

keypoint_names (movement.validators.datasets.ValidPosesDataset attribute)

L

LayerStyle (class in movement.napari.layer_styles) LineOfInterest (class in movement.roi.line)

list_datasets() (in module movement.sample_data) log_to_attrs() (in module movement.utils.logging)

M

make_broadcastable() (in module movement.utils.broadcasting) median_filter() (in module movement.filtering) module movement.filtering movement.io.load_bboxes movement.io.load_poses movement.io.save_poses movement.kinematics movement.napari.convert movement.napari.layer_styles movement.plots.occupancy movement.plots.trajectory movement.roi.base movement.roi.conditions movement.roi.line movement.roi.polygon movement.sample_data movement.transforms movement.utils.broadcasting movement.utils.logging movement.utils.reports movement.utils.vector movement.validators.arrays movement.validators.datasets movement.validators.files movement.filtering module movement.io.load_bboxes module movement.io.load_poses module movement.io.save_poses module movement.kinematics module

movement.napari.convert module movement.napari.layer_styles module movement.plots.occupancy module movement.plots.trajectory module movement.roi.base module movement.roi.conditions module movement.roi.line module movement.roi.polygon module movement.sample_data module movement.transforms module movement.utils.broadcasting module movement.utils.logging module movement.utils.reports module movement.utils.vector module movement.validators.arrays module movement.validators.datasets module movement.validators.files module MovementLogger (class in movement.utils.logging)

N

name (movement.roi.base.BaseRegionOfInterest property) (movement.roi.line.LineOfInterest property) (movement.roi.polygon.PolygonOfInterest property)

normal() (movement.roi.line.LineOfInterest method)

P

path (movement.validators.files.ValidAniposeCSV attribute) (movement.validators.files.ValidDeepLabCutCSV attribute) (movement.validators.files.ValidFile attribute) (movement.validators.files.ValidHDF5 attribute) (movement.validators.files.ValidVIATracksCSV attribute) plot() (movement.roi.base.BaseRegionOfInterest method) (movement.roi.line.LineOfInterest method) (movement.roi.polygon.PolygonOfInterest method)

plot_centroid_trajectory() (in module movement.plots.trajectory) plot_occupancy() (in module movement.plots.occupancy) PointsStyle (class in movement.napari.layer_styles) pol2cart() (in module movement.utils.vector) PolygonOfInterest (class in movement.roi.polygon) position_array (movement.validators.datasets.ValidBboxesDataset attribute) (movement.validators.datasets.ValidPosesDataset attribute)

R

region (movement.roi.base.BaseRegionOfInterest property) (movement.roi.line.LineOfInterest property) (movement.roi.polygon.PolygonOfInterest property)

report_nan_values() (in module movement.utils.reports) rolling_filter() (in module movement.filtering)

S

savgol_filter() (in module movement.filtering) scale() (in module movement.transforms) set_color_by() (movement.napari.layer_styles.PointsStyle method) set_text_by() (movement.napari.layer_styles.PointsStyle method)

shape_array (movement.validators.datasets.ValidBboxesDataset attribute) showwarning() (in module movement.utils.logging) source_software (movement.validators.datasets.ValidBboxesDataset attribute) (movement.validators.datasets.ValidPosesDataset attribute) space_broadcastable() (in module movement.utils.broadcasting)

T

to_dlc_file() (in module movement.io.save_poses) to_dlc_style_df() (in module movement.io.save_poses)

to_lp_file() (in module movement.io.save_poses) to_sleap_analysis_file() (in module movement.io.save_poses)

V

ValidAniposeCSV (class in movement.validators.files) validate_dims_coords() (in module movement.validators.arrays) ValidBboxesDataset (class in movement.validators.datasets) ValidDeepLabCutCSV (class in movement.validators.files)

ValidFile (class in movement.validators.files) ValidHDF5 (class in movement.validators.files) ValidPosesDataset (class in movement.validators.datasets) ValidVIATracksCSV (class in movement.validators.files)